Package index • clustOpt

Core Functions

Main clustering optimization functions

clust_opt(): clust_opt

leverage_sketch(): leverage_sketch

Utility Functions

Helper functions for data processing and validation

check_size(): check_size

get_valid_samples(): get_valid_samples

convert_seurat_to_bpcells(): convert_seurat_to_bpcells

adjusted_rand_index(): Calculate Adjusted Rand Index

Analysis Functions

Functions for preparing and analyzing data

prep_train(): prep_train

prep_test(): prep_test

train_random_forest(): train_random_forest

calculate_silhouette_score(): calculate_silhouette_score

project_pca(): project_pca

Visualization

Functions for plotting and summarizing results

create_sil_plots(): create_sil_plots

sil_summary(): sil_summary

Internal Functions

Internal helper functions

split_pca_dimensions(): split_pca_dimensions