prep_test

Prepare test data for random forest

Usage

prep_test(input, subject_ids, dtype = "scRNA", test_id, verbose = 0)

Arguments

input

Seurat object

subject_ids

Metadata field that identifies unique subjects.

dtype

Type of data in the Seurat object "scRNA" or "CyTOF", default is "scRNA". CyTOF data is expected to be arcsinh normalized.

test_id

subject_id for the test sample

verbose

Integer verbosity level (0 = silent, 1 = milestones, 2 = detailed, 3 = includes Seurat output)

Value

Training data formatted for sil_score, format depends on dtype