prep_train

Prepare training data for random forest

Usage

prep_train(input, subject_ids, dtype = "scRNA", within_batch = NA, test_id)

Arguments

input

Seurat object

subject_ids

Metadata field that identifies unique samples.

dtype

Type of data in the Seurat object "scRNA" or "CyTOF", default is "scRNA". CyTOF data is expected to be arcsinh normalized.

within_batch

Batch variable, for a given sample only those with the same value for the batch variable will be used for training.

test_id

subject_id for the test sample

Value

Training data formatted for sil_score, format depends on dtype